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Type 'license ' or 'licence ' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors ' for more information and 'citation ' on how to cite R or R packages in publications. Type 'demo ' for some demos, 'help ' for on-line help, or 'help. Type 'q ' to quit R. Labels: centos , centos 5. Fixed now. Labels: blas , centos 5. ROCKS 5. Please note that I am not an expert on optimisations or computers or anything so comparing Openblas vs ATLAS won't tell you which one is 'better'.
They are just numbers based on what someone once observed on a particular system under a particular set of circumstances. LOG for details. Posted by lindqvist at 1 comment: Email This BlogThis! Preamble: I've seen just about any error message imaginable when compiling Quantum Espresso.
You can most likely get around them by following this guide ad verbatim no parallel environment detected, can't build fortran programs, no linker, parallel vs serial compiler etc. This compile is nothing like the easy-breezy one on debian, because of one reason: CentOS 5. It's so old that the default gcc version can't compile QE. CentOS 5. At least it'll buy you a little geek cred.
Also, it seems that you need to use math and mpi libs compiled with the same compiler as you use to compile quantum espresso. Also, I haven't reported the configure bug for openmpi 1. Feel free to reproduce and report it. I'm not happy that Quantum Espresso ignores the compile flags I've given it and defaults to things it should not default. I've had to jump through way too many hoops to be happy about this.
OpenMPI not supporting program-suffix annoys me as well. This is another massive compile I'd rate it as my most annoying, troublesome and infuriating one yet. Labels: centos 5. Compiling gcc 4. See flakrat's post for an up-to-date working version. Update s : This is the first time I compile the GCC and because of this I will like be going back, updating this document over the coming days. Make sure to 1 check back in a week and 2 hit refresh.
Updated given in Melb. I looked at installing GCC 4. Ultimately I got scared of messing up a production cluster and decided that compiling, while slower, is a whole lot safer -- especially if you're not comfortable with the local package manager. So, here's the alternative route of compiling your own. On the other hand, I freely admit that this is probably in large part due to not being used to it. This is probably my most massive compilation, owing to the number of packages I ended up compiling a lot of these are probably optional.
Guile in particular is very, very demanding. The order in which things are done is not random 1. Download and untar all the sources NOTE: you should, if possible, select mirrors based on where you are. However, sometimes you're stuck in a shell and just need to get those files downloaded.
Posted by lindqvist at 6 comments: Email This BlogThis! Labels: 4. The local, workstation install worked fine. I never really bothered much about the cluster install, and only recently looked closer at it. Well, I can launch the 'gateway' but nothing else -- when I click on e. Turning on logging doesn't yield anything either. Ergo, I figured that building it myself may yield a different result. Just follow the instructions i. Answer no to running tests again. In order the 3rd party packages that will be built are: 1.
Apache Xerces XML parser 2. Mesa OpenGL 3. Apache HTTP web server". The sixth time ECCE itself is built, and that's the step that takes by far the longest. Tags : Role: Shared Library. This page is also available in the following languages How to set the default document language :. To report a problem with the web site, e-mail debian-www lists. For other contact information, see the Debian contact page. Debian is a trademark of SPI Inc. Learn more about this site.
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